Wednesday, December 3, 2014

An open letter to the University of Oregon administration about the GTFF strike.

I've been following the labor dispute between the University of Oregon administration and graduate students the ever since my friend Meaghan - a PhD student there - wrote this blog post on the ongoing graduate student contract negotiations. In the time since she published this post, bargaining with the University of Oregon administrators failed to yield an agreement on paid sick leave, maternity/paternity leave, and liveable wages for all graduate teaching and research assistants. To add insult to injury, the University of Oregon administrators have been playing a borderline unethical PR game against the UO graduate students union, including a plan to break the strike by effectively undermining the academic integrity of the University. You can find more details on what has lead to the strike here and here as well. My goal is not to sift through the details of why the strike is happening. I'm here to make a case for why it should never have happened in the first place. And make no mistake, that the situation has come to this is a disgrace to the University of Oregon as an institution of higher learning and research.

Let me explain.




Many of these lovely folks had some role in whipping me into shape
during my time at UO as teaching assistants in courses I took.
I was never, nor will I be, a graduate student at the University of Oregon. My stake in this is a different kind of personal. As an undergraduate in the Department of Geological Sciences at the University of Oregon, I had the privilege of working with some outstanding graduate teaching fellows (GTFs; known as TAs/teaching assistants elsewhere). These GTFs made an indelible mark on me as an aspiring scientist and educator, and set an example I strove to emulate later as a graduate student and teaching assistant at Oklahoma State University. 

The knowledge and wisdom they imparted to me is something I could never put a price on, ever. I can confidently say that I would not be who or where I am today without their support, guidance, and influence. So it really boils my blood when I hear that the UO administration is saying the GTFs aren't important enough for an honest, contractually designated livable wage, parental leave, or sick leave. GTFs are the heart and soul of the education and research missions of the University. They grade papers and labs. They publish research. They work one on one with students in labs and classes. They mentor students who aspire to someday help expand the breadth of human knowledge, and share their wonder and excitement for their field of study. They inspire, engage, inform, and do their damnedest to impart a sense of taking pride in one's work. (For example, don't just tear sheets out of your notebook and hand them in. It looks sloppy and lazy. I never thought about it much before, but after being called out by my GTF I cut that shit out right away.)

My questions therefore to the administrators at the University of Oregon are simply these: Who do you think you are to disrespect, patronize, and undermine these already overworked, under-paid souls? Who do you think you are to tell them they don't deserve sick leave, or parental leave if they want to start a family? Who do you think you are to tell them they don't deserve a livable wage? These GTFs are the University of Oregon. Your treatment of them in this ordeal shows that you only value them for their ability to grade papers and churn students through classes. GTFs interact with most students on a much more personal level than many faculty. It's the nature of their job. My GTFs inspired me to be better than I was, both personally and professionally. All you and your predecessors ever seemed to do was raise my tuition; if those tuition hikes had gone towards better pay and benefits for the people who engage in front lines of the education, research, and scholarship missions of the University, I would be all for it. Clearly they did not, and are not being used as such now.

Think hard on these questions, residents of Johnson Hall. As an alumnus of the University of Oregon, I have always bragged about the outstanding people I had the privilege of working with during my time there. I would recommend Oregon to promising, enthusiastic undergrads and Masters students looking for graduate programs. Your treatment of the GTFs is a black mark on the University as a destination for the future educators, leaders, innovators, and researchers looking for graduate programs to apply to. Look past your pride and ask yourself if this is what you want your legacy to be at the University of Oregon. We alumni are watching, and many of us do not take kindly to you tarnishing our beloved University, or disparaging the graduate teaching fellows who contribute so, so much to making the University of Oregon the amazing place it is.


 

Sincerely yours,
David Levering, M.S.
Education Director
Sternberg Museum of Natural History
Fort Hays State University
UO Department of Geological Sciences, class of 2007


Oregon, our Alma Mater,
We will guard thee on and on,
Let us gather 'round and cheer her,
Chant her glory, Oregon!
Roar the praises of her educators,
Sing the story, Oregon,
On to vict'ry urge the researchers
Of our Mighty Oregon!
(bridge)
Go! Ducks! Go!
Fight! Ducks! Fight!
Go!
Fight!
Win! Ducks! Win!

P.S.  If you would like to support the UO GTFF 3544 Union, you can get in touch with them through Twitter @GTFF3544. You can also donate to the GTFF 3544 by following this link.

Friday, November 14, 2014

Let's talk about how paleontology gets done.


So you may or may not be aware of the dinosaur fossil sale dustup over on ThinkGeek that began about three weeks ago. To summarize, ThinkGeek put some dinosaur fossils up for sale on their site, and the vertebrate paleontology communities caught wind of it. Most of the comments about the sale came from two camps: the museum/university paleontology community, and the commercial paleontology community. The museum/university paleontologists have voiced overwhelmingly critical opinions of the sale, while the commercial paleontologists have supported it. The storm of comments has quieted down over the past few days and I've had time to let my own thoughts settle. I've come away realizing that there is a giant, gaping lack of knowledge and a lot of misinformation about how the science of paleontology gets done. This includes fieldwork and collecting of fossil material that drives research and education, and how fossils are used to answer research questions in paleontology. Perhaps more importantly, there is a gap in understanding of why these processes work the way they do and why many of them are necessary. So, I'd like to talk about how paleontology as a field of science gets done and why so many paleontologists are against the commercial sale and auctioning of vertebrate fossils.
Fossil hunting for the NPS at Hagerman Fossil Beds in
Hagerman, Idaho. Here we are searching for micro-fossils,
which includes material like rodent teeth, and bones from
rodents, frogs, small snakes and fish, and sometimes birds!
They may seem small and useless, but these kinds of
fossils form the basis of our understanding of
ancient ecosystems.


The importance of accessible museum fossil collections, and doing good science.

In order to get science done, scientists need data. Data are made up of individual occurrences, observations, and measurements, which are collected and analyzed in a rigorous fashion. These data and the analyses they are subjected to become completed research, which, bit by bit, build on our understanding of the past (in the case of paleontology). Robust data sets with lots of data points, when studied using reliable, appropriate methods, provide stronger results. Stronger results create a better position to generate conclusions about the research that was done.  For paleontologists, fossils are data, the essential materials upon which all the science is built. This means that for paleontologists doing research that requires large data sets of a single group of fossil organisms, or lots of fossils from lots of different organisms, a large number of fossils are needed. Sometimes the researcher will need a large number of fossils of a very specific part of a single group of organisms. Rodent molars, camel ankles, snake vertebrae, sauropod dinosaur femora, and fish fins are tiny set of research topics that may require many, many fossils from different species across wide stretches of geologic time.

Meaghan, with a fossil oreodont skull. What kind of oreodont?
Meaghan is studying all the well-preserved
skulls she can find to answer that exact question. She is also,
on occasion, cuddling them.

One pro-fossil sales commenter noted, for example, that oreodonts are extremely common, and that selling a hundred would do little to harm any science. It is important to remember that not all fossils, even from a single group of organisms, are exactly alike. An identifiable fossil from a common prehistoric organism can be just as scientifically useful and important as a fossil of a less common organism. For example, Meaghan Emery over at Mary Anning's Revenge is studying oreodonts. More specifically, she is looking at their skulls to work out how we can accurately tell different oreodont species apart. This is really, really hard because of the natural variation that exists between different individuals of the same species, and sometimes between males and females of the same species. Similarities between different species also makes this research tough. Throw in changes in skull shape and appearance that take place as an animal ages, and you can see how difficult this question can be to answer. To work around all of this natural biological variation, she needs a whole bunch of well preserved oreodont skulls of all shapes and sizes. Losing a hundred skulls - Or even twenty! - to commercial markets, be it now or over the course of the last one hundred years, would be a huge deal for the outcome of her project and the quality of new understanding it brings us. It all adds up! Our understanding of the history of life on earth is an accumulation of knowledge gained from fossils collected and studied by paleontologists. Lose the fossils, and our ability to learn and understand new things is lost as well, piece by piece, fossil by fossil.


A fossil borophagine jaw fragment (above the rock hammer).
It may not look like much, but it turned out to be one of the
more scientifically important specimens collected during
the University of Oregon paleontology field season back in
the summer of 2008.
You may wonder why this should concern you. If you aren't a scientist, but still love dinosaurs or sabertooth cats or ancient fish, you may be asking why you should care about the needs of graduate students, professors, and other scientists who you don't know, doing work you are not directly interested in. Science is a cumulative effort. In completing a new research project, a scientist may read a few dozen to a few hundred previously published research articles; past discoveries elevate our understanding, and our ability to push forward into new realms of discovery. Without the past research, and the fossils that made it possible, no matter how obscure or insignificant they may seem, we would not be able to progress our understanding effectively. This means that the cool discoveries you hear about online or in magazines, and the intricate science behind those discoveries, would not be possible without the accumulation of less publicized science that came before them. One person's unidentifiable piece of bone is another researcher's data point. A single paragraph or figure in a research article can inspire a doctoral research project. We do not know what we do not know, and only by enabling researchers with tools and resources will we be able to share in their discovery. For paleontologists, this means access to the fossils that are the building blocks of their science. Without the fossils housed in museum and university collections around the US, and other collections around the rest of the world, we simply would not know anywhere near as much about the history of life on earth as we do. 

Eric Scott, seen here measuring the holotype of Equus lambei
right before sampling it for age analysis, and attempting DNA
extraction. According to Eric, "
This skull of Equus lambei
has been looked at off and on by various authors since it
was first published on in 1917." So this one horse skull
has contributed to a lot of science! It's still being measured
and used for research almost 100 years after it was first
described!
An important aspect of any science is that it should be repeatable by other scientists. This means that scientists should have the ability to access the same raw data, or the means to acquire similar raw data, as other scientists. Being able to use the same or very similar raw data enables scientists to do research that tests each other's results and conclusions. In paleontology, this means being able to access the same fossils as other scientists. Holding fossils in repositories such as university and museum collections ensures the fossils will be held in the public trust for perpetuity, where we can continue to learn from them with minimal fear of the fossils being lost or needlessly destroyed. Without this system in place, it would be very difficult for paleontologists to do good science, because repeatable access to fossil specimens - the data used to do paleontology - would be inconsistent at best. Fossil collections held at universities and museums ensure that fossil resources will continue to be available for us to learn from for decades to come.


Paleontology Camp students I worked with this past summer,
here excavating fossil remains of a mosasaur. The Sternberg
Museum had expressed written permission to excavate
this mosasaur specimen, and to collect any other fossils
found within the same quadrant of the property. In signing
the permission agreement, the land owner also donated all
collected fossils to the Sternberg Museum to be held in
the public trust for perpetuity.

These fossils that fill our museums and university research and education collections are sourced from fieldwork. In the United States, professional paleontology field work commonly happens in one of two ways: 1) permitted collection from state and federal lands, or 2) permitted collection of fossils from private land. A written permission document outlining the agreed upon conditions and stipulations of the fossil collecting is signed by the land manager, be they government employee or private owner. Similar expressed written and signed agreements are also required for paleontologists doing fieldwork in foreign countries.


Nick Famoso, seen here during his summer field work at
John Day Fossil Beds National Monument. Fossils collected on
State and Federal lands are held in the public trust for research
and education, so that everyone can benefit from what they can
teach us. This includes museum exhibits, and research that
requires access to fossil specimens to expand our understanding
of the Earth's history, and the evolution of life.




The purpose of paleontological research and education collections built through field collecting is to generate and spread knowledge. The scientists and educators that work at universities, museums, and for state and federal land management agencies are not out to horde fossils away from where the public can experience and appreciate them. Just the opposite. Their mission regarding paleontology is the care and protection of fossil resources brought into the public trust that are a part of our national and global heritage, and to advance our understanding of the Earth's geological and biological history through research and education. I have worked with and for universities, museums, and the Department of the Interior doing paleontology fieldwork. Our goals in collecting fossil material always fell within these bounds.


Collecting a fish operculum at Castle Rock in western Kansas.
Castle Rock has been made open to public collecting by the land
owner. In this instance, students participating in the Paleontology
Camp program were allowed to keep fossil material that had
been judged by Museum staff to be of minimal or no research
or educational usefulness. The fossil above is now resting
at the Sternberg, where it will either be added to the research
collection, or added to the education collection, and used for
public programs.







The education argument.

I have heard some commercial collectors of fossils argue that "useless" fossils should be made available for sale in the interest of education, especially to kids. I'm all about education. It's my primary job as the Education and Outreach Director to be firmly focused on best practices in natural history education. So, let me explain why this education-justifies-fossil-sales argument is unhealthy for science, and science education.

During the summer camps I run, if and when students are allowed to keep fossil fragments, it is on private land where the owner has given explicit, written permission that we have access rights, for the purposes of research and education. Students are further not allowed to keep any fragments, diagnostic or not, without stated landowner permission, or assessment by museum staff for scientific or educational value. All fossil material we find is assessed for research or education utility by our Curator of Paleontology Dr. Laura Wilson and/or myself; any collected material not deemed suitable for research purposes is allocated to education, with proper geographic and geological context data recorded and included with the fossil specimen.

We make this system crystal clear with all of our students because we are in the business of education as well as encouraging responsible, ethical, and legal field paleontology practices. In the occasional instance where all of these conditions are met and a fossil is deemed not useful for research or education, a student may be allowed to take home a piece of vertebrate fossil material collected with permission from the private landowner. Students that attend our paleontology camp programs are paying for a hands-on, immersive field education experience, not for the opportunity to collect and keep fossil material. You will notice that at no point does the action of selling the vertebrate fossil material as a discrete item occur, thus avoiding the promotion of fossils as a commercial good instead of a scientific or educational resource. 

 

How can you help?

The Sternberg Museum staff had a great time working with
a group of highschool students plus their AP biology teacher
and a family of landowners on a mosasaur dig last spring.
The fossils were found by one of the landowners, who
mentioned the find to the biology teacher, who then brought
it up with his students as a possible capstone project. The
students got in touch with Sternberg Museum paleontologist
Dr. Laura Wilson (seen above next to the plaster jacket). They
brought photos that had items for scale in them! We agreed
to help them excavate the fossil so long as the landowners
agreed to donate it to the Sternberg Museum where it could
be properly cared for and used for research and education.
This incredibly valuable educational opportunity was made
possible through conscientious efforts made by the landowners
and high school students involved with the project. To
learn more about this dig, check out the blog post written
by Dr. Wilson here.


So let's say you've found a fossil, and want to make sure it ends up someplace safe where it can be used for education and/or research. (Thanks, by the way! All current and future paleontologists and paleontology enthusiasts appreciate your generosity!) When people find a fossil one of the first things they usually want to do is pick it up or dig it out of the ground and examine it, then hopefully take it to a paleontologist for identification. Let me say, on behalf of all paleontologists of the world, to please please please resist this urge! The location of a fossil is just as important as the fossil itself. Knowing exactly where a fossil came from allows paleontologists to understand the fossil in its geological context, which is very important for doing research and identifying the fossil. The absolute best thing you can do is to contact a professional paleontologist about your find. Before you do that though, there are some steps you need to go through: 1) Take a photo of the fossil still in the ground (adding something for scale like a hat or a quarter is helpful for paleontologists); 2) Take a GPS position or take steps to make sure you can locate the place where you found the fossil. Sometimes making a pile of stones over the top or leaving a small bit of flagging can help with this; 3) Be sure you speak to the landowner to confirm that they are okay with you contacting a paleontologist about the fossil. If you are the sole land owner, then obviously this step will be very easy. If you are in a national park, national monument, or some other area of public lands, take your photo to the interpretive center, along with your contact information. Ask whomever you speak to to let the paleontologist on staff know about the find.

Once you get permission from the private landowner to contact a professional paleontologist at your local museum, university, or regional government land management agency (BLM, NPS, etc), and you have your photograph of the fossil with something for scale, you are ready to notify the paleontologist of your find. (Note: If you are using email, make sure to shrink the photo(s) down to a reasonable size so you don't blow up said paleontologists email inbox. They will appreciate it.) Please be patient in waiting for a response back. Professional paleontologists tend to be extraordinarily busy people with a lot of different responsibilities. Give them a little time, and they will get back to you. If it seems like it has been an excessively long time without hearing anything, send them a short, polite reminder. Usually this will do the trick. If the fossil in the photo you sent looks interesting to the paleontologist you contact, they will most likely work out with you and the landowner a time to come look at the fossil in person to establish its usefulness for research or education, and potentially a donation of the fossil material to the university/museum if the fossil is to be collected. If the donation of the fossil(s) is agreed to by the landowner and the paleontologist, then a donation agreement will need to be signed by the landowner, which will be filed along with other records from the collection of the fossil(s). Once this is done, the digging can start, and you can be confident that the fossil you found will be held in perpetuity by the museum/university it is being donated to, as a new edition to our ability to understand the history of life on Earth! Congratulations, you've just made a positive contribution to science! Hurrah!






Museum staff, a high school teacher and his students, and
a family of private landowners cooperated to get this incredible
mosasaur fossil housed at the Sternberg Museum where we can
make the most of its potential contributions to science and
science education! Everyone wins!









P.S. Another quick tip: If the paleontologist you are contacting is a woman, use the prefix Dr. or prof., not Miss, Ms., or Mrs. when communicating with them. It may seem like a little thing, but they worked just as hard on earning that doctorate as any male paleontologist, and almost always prefer that the earned prefix be used. If the paleontologist you contact does not have a doctorate, they will usually say so pretty quickly if you call them doctor. Better safe than sorry. :-)

For a longer, more detailed discussion of the negative impacts that the sale of fossil resources has on the modern science of paleontology, please check out this detailed write up by Eric Scott, who is the Curator of Paleontology at the San Bernardino County Museum.


Thank you to Eric Scott, Nick Famoso, and Meaghan Emery for the use of their photographs. Thanks also to Edward Davis, Eric Scott, Ted Fremd, and Richard Bykowski for discussion and input that helped shape this post.

Ceratogaulus Rye Ale

Ceratogaulus the prehistoric rodent is a fascinating little creature, with a deceptively obvious identifying feature: Two large horns protruding from its nose! Indeed, it is the only known rodent to have ever had horns, and one of only two fossorial (digging) mammals known to have had horns at all. Naturally, one may ask the question "Why did this particular rodent evolve horns??" Why, indeed! The most supported answer uses a combination of evidence from fossil bones and modern animals to address this very question.
This is a skull of Peltephilus, a fossorial xenarthran belonging to
the family Dasypodidae, which includes modern armadillos.
Peltephilus and Ceratogaulas are the only known fossorial
mammals with horns! Sadly, no horned fossorial mammals are
known to exist today. *Sad trombone*
Ceratagaulus: The only known rodent to have horns!
Here you can see the two horns projecting out of the skull.


The first piece of evidence comes from the now extinct family of rodents called the Mylagaulidae. Most known mylagaulids had skeletal adaptations for digging through soil, including broad, shovel-like hands with claws to match, and robust limb bones. Great for moving lots of dirt! In addition, mylagaulids also had adaptations for what is called head-lift digging, a method of burrowing that involves pressing the top of the head forward and up, compacting the soil. This requires some very strong neck muscles! Now, before you jump up and yell "Aha! Those horns were for digging!", let's dig a little deeper. With our heads.

This is the skeleton of a modern mole, which is not a
mylogaulid, or even a rodent. It is however a
fossorial mammal, with arms and hands
exceptionally well adapted for digging!









Research by Dr. Samantha Hopkins (2005) provides evidence against Ceratogaulus being able to angle those horns properly to dig with! They just couldn't tilt their noses down far enough to really push those horns into the soil in front of them. What's more, through the evolutionary history of the genus Ceratogaulus, those horns moved back on the skull, away from the tip of the nose where they would be of better use for digging. So, the horns-as-digging-tools idea is out. What about sexually dimorphic features, like the horns that rams use to fight for mates? In those cases, we would expect to see a difference in horn size - or presence - between male and female individuals. This sex-based difference is not found in Ceratogaulus. So, that hypothesis is probably out also. But the horns are clearly providing Ceratogaulus with an evolutionary advantage, otherwise they would not be present.

Defending oneself from predators is also a good reason to have some pointy objects sticking out of your head. No one likes to get stuck with pointy objects, especially when those pointy objects are being powered by some really strong muscles... Such as those powerful head-lift-digging mylagulid neck muscles mentioned earlier. Turns out those muscles can be used for other things too, like driving a pair of nose-spikes into an attacker! The flexing of those powerful neck muscles would snap the head dorsally, the same way your neck muscles contract to let you look straight up while standing. Lots of predators like to attack small rodents. They are very snackable, and once you get a hold of one, they rarely put up much of a fight. Those same predators commonly go for the vital head and neck regions to make a killing strike. The anatomy of Ceratogaulus - including the horns and attachments for the neck muscles - would have allowed it to protect itself from attacks to the head and dorsum of the neck by thrusting those two horns at any attackers! *JAB JAB!*


Dr. Hopkins has been kind enough to answer a few questions about her work on Ceratogaulus, including what kind of science still needs to be done to understand its biology. 


How did you first become aware of the two-horned wonder that is Ceratogaulus?

I first discovered Ceratogaulus in my first year of graduate school, when I was working on the description of a new species of aplodontid rodent. I was trying to find papers on all its relatives, and I came across mylagaulids, including Matthew's original paper describing the skeleton of Ceratogaulus hatcheri from Kansas. The figure at the end of the complete skeleton just totally blew my mind. Horns? What????

What made you decide to tackle the question of what the horns were for?

The horns question was an obvious one. There's no living analog, so it's one of those questions in paleo that requires really clever experimental design. Another project I was working on had just fallen through, and I managed to sell my advisor on the idea that figuring out what the horns did would be a really interesting sidelight in a project about lineage decline in the Aplodontidae, which were quite diverse in the Early to Middle Miocene.

What was the most challenging part of figuring out what Ceratogaulus horns were used for?

The challenging part of this problem is that, given that they're a fossil organism, you're forced to work with multiple hypotheses all at the same time. The only way to come up with an answer is to eliminate them one by one until there's nothing else left. Coming up with the evidence to eliminate some of the possibilities was tough, because some of them don't make a lot of predictions for what you should observe in the fossil record. Fortunately, Ceratogaulus left us a really good skeletal record.

Is there a particular Ceratogaulus specimen that is your favorite?

I don't have a favorite. I love all the children equally. In all seriousness, the thing I find really appealing about them is the sheer diversity. There are a lot of skulls, and the horns come in many different shapes. And that leads into....

Are there any lingering questions you have about Ceratogaulus that you would like to work on in the future?

Why are the horns so variable? What does the variation in horn shape mean? We're still working on this one, and it may turn out that some aspects of the answer weren't as simple as I initially thought. We still need more specimens, and more study of the specimens we have. It's a really interesting animal, and there's a lot left to know.



Cheers, you adorable little conundrum, you!


Art by Ursulav (ursulav.deviantart.com; redwombatstudio.com)

Rye has been a brewing grain of interest to me since I first tried Hoss from Great Divide Brewery. I'm not really a lager beer drinker. Not enough flavor, usually. The part about Hoss that got me interested was the rye. I was still pretty new to the craft beer scene at that time, and the idea of a beer made with rye seemed fascinating as well as odd. Isn't rye the grain used to make that dark colored bread that only seems to exist in upscale delis? Hmm....

The Hoss was pretty good. Not great enough to make me a lager convert, but a solid, interesting beer. The flavor complexity that the rye provided really held my attention. I've had a few rye beers since, most of them being pale ales or IPAs; I have a ryewine in my fridge waiting for a special occasion also. It's neat grain, and adds some interesting flavor to a beer that I wanted to make use of when I started homebrewing.

I knew when I started putting this recipe together that I wanted the beer to be malt-driven but not sweet, with a fairly light body. The rye was going to be the star of the show, but it didn't need to be an extravaganza. Subtle and complex was to be the name of the game. In pursuit of this goal, I decided to use both regular malted rye and caramel rye in the recipe, along with a low dose of intermediate strength hops. I also used a straightforward American ale yeast helped ensure a minimal yeast-based flavor contribution. Thus was born Ceratogaulus Rye Ale. A small (low alcohol) beer with some interesting complexity, and spicy malt kick!
Type: All Grain
Batch Size: 1.0 gal
Fermentation: Ale, Two Stage
Date: 31 Jul 2014
Brewer: David Levering

Ingredients
Amt Name Type # %/IBU
2 lbs Pale Malt (2 Row) US (2.0 SRM) Grain 1 57.1 %
1 lbs Rye Malt (4.7 SRM) Grain 2 28.6 %
4.8 oz Crystal Rye (75.0 SRM) Grain 3 8.6 %
3.2 oz Caramel/Crystal Malt - 10L (10.0 SRM) Grain 4 5.7 %
0.10 oz Cascade [5.50 %] - Boil 30.0 min Hop 5 7.7 IBUs
0.10 oz Willamette [5.50 %] - Boil 30.0 min Hop 6 7.7 IBUs
0.10 oz Cascade [5.50 %] - Boil 10.0 min Hop 7 3.6 IBUs
0.10 oz Willamette [5.50 %] - Boil 10.0 min Hop 8 3.6 IBUs
0.10 oz Cascade [5.50 %] - Boil 5.0 min Hop 9 2.0 IBUs
0.10 oz Willamette [5.50 %] - Boil 5.0 min Hop 10 2.0 IBUs
1.0 pkg American Ale (Wyeast Labs #1056) [124.21 ml] Yeast 11 -
0.10 oz Cascade [5.50 %] - Dry Hop 3.0 Days Hop 12 0.0 IBUs
0.10 oz Willamette [5.50 %] - Dry Hop 3.0 Days Hop 13 0.0 IBUs

 

 Gravity, Alcohol Content and Color

Est Original Gravity: 1.065 SG
Est Final Gravity: 1.012 SG
Estimated Alcohol by Vol: 7.0 %
Bitterness: 26.7 IBUs
Est Color: 15.4 SRM
Measured Original Gravity: 1.046 SG
Measured Final Gravity: 1.010 SG
Actual Alcohol by Vol: 4.7 %
Calories: 151.6 kcal/12oz

Mash Profile

Mash Name: Single Infusion, Light Body, Batch Sparge
Sparge Water: 0.97 gal
Sparge Temperature: 168.0 F
Adjust Temp for Equipment: FALSE
Total Grain Weight: 3 lbs 8.0 oz
Grain Temperature: 72.0 F
Tun Temperature: 72.0 F
Mash PH: 5.20
Mash Steps
Name Description Step Temperature Step Time
Mash In Add 4.38 qt of water at 159.1 F 148.0 F 75 min

Sparge: Batch sparge with 2 steps (0.15gal, 0.82gal) of 168.0 F water
Mash Notes: Simple single infusion mash for use with most modern well modified grains (about 95% of the time).

Carbonation and Storage

Carbonation Type: Bottle
Pressure/Weight: 0.86 oz
Keg/Bottling Temperature: 70.0 F
Fermentation: Ale, Two Stage
Volumes of CO2: 2.3
Carbonation Used: Bottle with 0.86 oz Corn Sugar
Age for: 40.00 days
Storage Temperature: 65.0 F 
Tasting notes:

From Medhavi Ambardar:
"Don't change this recipe. It's great just the way it is."

From Win McLaughlin:
" (I'm) having a hard time coming up with much to critique on your beer David. It's excellent. I like the sweet notes with a bit of hop (but not so much as to be bitter). I think I could use a touch more malt to make the initial taste a bit more full bodied and continue to balance out the sweet flavors. Dylan (my male creature) is trying it too. he says it's 'very flavorful, not much hops, not bitter, slightly fruity'."


Sources cited

Hopkins, S.S.B. 2005. The evolution of fossoriality and the adaptive role of horns in the Mylagaulidae (Mammalia: Rodentia). Proceedings of the Royoal Society B, 272: 1705-1713. 

Wednesday, November 12, 2014

2014 National Fossil Day notes from students!

I got a stack of thank-you notes in the mail today from students who attended our 2014 National Fossil Day celebration at the Museum. Some are fun, some are cute... and most of them got something positive out of the experience! Learning! Hurrah! Mission accomplished! (I have corrected some spelling and punctuation in the following quotes.) Enjoy!


- "I loved our visit to the Sternberg Museum. It was historical fun and filled with honesty and good people."

- "I thought you could only study bones from the outside, and not the inside, and I did not  know that bird bones are hollow and help them fly."

- "I liked the soft shell turtle. It was so cute. And the hog nose snake too. That fat toad was funny, and that gray thing in the fish tank, was that an eel or an axolotl? All those little snails are so cute. The little mice are so cute. Do you feed the snakes with them?"

- "I can't wait to come back next year."

- "I also learned that bugs have exoskeletons, which means their skeletons are on the outside."

- "I learned that on an alligator bone you can count the rings to see how old it was."

- "I liked the dead penguin legs. I also liked the animals that were downstairs. But my favorite was the penguin legs." *Accompanied by a drawing of what it takes to dig up fossils: Shovel, rake, sweat, dirty hands*

- "I learned that horses used to have three toes."

- "It was cool when we got to look inside the microscope. Today was the best day ever. I also learned that horses used to have 3 toes. I think that is crazy. I have so much that I learned I don't think I can fit it all."

- "My favorite was the mosasaur dug up by the Quinter (high school) kids. The mosasaur was really cool."

- "Thank you for taking your time to teach us about bones. I learned that if you didn't have bones you would be kind of like a puddle."

All the feels! :-)

Thursday, October 23, 2014

Sternberg Museum Outbound

I have been working at the Sternberg Museum as the Director of Education and Outreach for just over a year now. My first big project was the establishment of the Sternberg Museum Science Camps for elementary, middle, and high school students. Unfortunately, under this system alone, after participants finish high school there were no big programs being offered by the Museum that science adventure enthusiasts could participate in. To address this gap in big, cool science education trips and programs for adults, we have created Sternberg Museum: Outbound!

Love science? Enjoy traveling to new places and learning new things?
Join us on one of our Sternberg Museum: Outbound trips!
Sternberg Museum: Outbound is our way of providing a grown-up version of science camp trips. We will travel to locales outside of Kansas, focusing on topics in the earth and life sciences through the lens of the culture and natural history of each destination. These trips will be lead by Sternberg Museum science and education staff, providing top-notch information and special behind the scenes opportunities at our various stops.

At the Denver Museum, trip participants will get a
behind the scenes look at the fossil collections
and science facilities!

















This year,  we are excited to offer a trip to Denver (December 13th and 14th), followed by a trip to Oregon next summer (June 29th-August 8th, 2015)! In Denver, we will be going behind the scenes of the Denver Museum of Nature and Science to see some of their scientific collections. This will be an excellent opportunity to see how a museum research collection of fossils is cared for, and the purpose they have in forwarding our knowledge of the the Earth's past. We will also be touring more than ten different breweries, meeting with brewmasters and getting a behind the scenes look at how different beers go from raw ingredients to finished fermented beverage. Special emphasis will be put into the science of brewing beer, including the biochemistry and evolution of yeast, water chemistry effects, and aspects of plant biology (grains, hops) that go into making the myriad of distinct styles of beer we enjoy today. We will also get a glimpse at how the physical process of brewing has changed since its earliest days, and the engineering feats behind those changes (or in some cases, lack thereof).


Brewmaster of De Steeg Brewery, Craig Rothgery, is a
mechanical engineer, and will be meeting with us in
Denver to discuss somebrewing science!

We will also be stopping by Crooked Stave,
a very unique brewery in Denver that
uses barrel-aging techniques to
create some truly interesting,
tough to make beers.














Our trip to Oregon will also include some stops at some amazing breweries, as well as wineries that litter the Willamette Valley. Our trek will start in Portland, then move southeast to the high desert of eastern Oregon, home of the John Day Fossil Beds National Monument (a word-class center of paleontological research), Smith Rock, and Crater Lake! Moving west, we will head through the Cascades mountain range through Eugene, and onwards to the coast to witness incredible sand dunes, thriving tide pool ecosystems, and, if we are lucky, see some whales! Stops at the Oregon Coast Aquarium and the Tillamook Cheese Factory are also on the itinerary. Upon returning to Portland at the end of our grand loop, we will stop by the Oregon Museum of Science and Industry, and drop by the Bite of Oregon, an annual food and drink festival featuring some of the best the state has to offer! All along the way, we will explore the geology, biology, and natural history of the state of Oregon.

The Painted Hills, a landmark of John Day Fossil Beds National
Monument in eastern Oregon.
In 2016, we will be offering a wine and geology trip led by Sternberg Museum paleontologist Dr. Laura Wilson, as well as a yet to be determined international trip! We are thrilled to be able to offer these exciting new guided adult science education programs. You don't even have to live in Kansas to participate! After registering for any particular trip, schedule your flight (or drive, sail, take a train, whatever suits you) and meet us at our starting point! From there, the group will set out on our adventure!

If you have any questions about participating in the Sternberg Museum: Outbound trips, you can contact me at DALevering@FHSU.edu, or by phone at 785-639-5249. To learn more, you can also visit the Sternberg Museum webpage by clicking the picture below!


Beer and prehistoric creatures! What
more could you want??

Sunday, September 28, 2014

The Students You Meet at Paleontology Camp

My 2006 field paleontology camp students in John Day, OR.

I always find it interesting working with high school students in extended outdoor programs. In my observations, my paleontology camp students have usually fallen in to one or more of these five groups: 


1) Dinosaur/Fossil Enthusiast students: Knows all the dinosaurs/fossils, where and when they lived, who their friends were, and what contemporary musicians they loved best. (Triceratops was definitely into post-Sauropod Cricket Chirp Harmonies, especially their early stuff.) They will share all of this with you, probably before the end of the first day. Then continue to share more until the camp ends. Get ready to have a whole lot of knowledge dropped on you!

2) Ambitious, Gets Stuff Done students: Sees something that needs doing, and gets it done. First to volunteer, even for crappy tasks that just need to get finished. Does the same difficult things as everyone else, but sticks with them twice as long and does them twice as well. Camp cooking or dish duty, digging a trench or flipping a giant field jacket, trying to interpret the first phylogenetic tree they've ever built/computed, helping pull a van out of the mud, or quarrying a hillside in 100 degree heat without a bit of whining; they will do it, and by god they are going to do it as best as they can until it's done or until they drop.

3) WOO Let's Go Do Stuff Outside students: Is it outside? Then this kid is stoked about it. Hiking in heat? Woohoo! Slogging through mud with an 80 pound jacketed fossil? Awesome! Spider in the tent? OOO it's got cool colors and mouth parts! Dead animal near a bush? Let's figure out what it is and what all these bones are! Man... it really smells... WHOA WHOA WHOA IT HAS BEETLES ON IT AND THEY ARE BURROWING INTO THE DIRT!

4) Power-Nerd students: Science is the best. Some science may be better than other science, but so long as it is science, it's the greatest thing ever. Sometimes science-fiction can also be the greatest thing ever too.... but hey, it's still got "science" in it, so close enough! Now let's talk about how freaking crazy wormholes and deep-sea tube worms are! Or who was the better captain: Kirk or Picard? Yaaaay!

5) Nature Hippie student: Easily the most laid back and universally friendly of the students. They are here because it sounded fun, and fun they will have! What they lack in intensity they make up for in pure-hearted love of seemingly all things. Meeting new people, meeting new caterpillars, carefully examining a pretty rock for no reason other than it looked cool; everything is neat and interesting in some way. They like nearly everything and everyone, with a parade that simply refuses to get rained on.

My 2014 field paleontology camp students, in western KS.

Sometimes over the course of a camp, especially long programs, I have seen students shift between these categories, which is always neat. Of all these groups, when it comes to pursuing a future career in science, I am most optimistic about students that fall at least partly into group 2. Why? Because even though they may not be walking encyclopedias at age 15, they get after everything that comes at them, even if it's a completely new task or experience.
 

(By the way, if anyone out there is looking to recruit a very promising high school student/future undergrad who has strong interests in metamorphic geology and engineering, let me know.)

Sternberg Science Camps 2015 planning is currently underway! The catalog for the summer 2015 camps should be out in the next few months. It's being completely revamped by the wonderful folks at the FHSU Relations Department. Stay tuned for more info on the new camps being debuted! 

Thursday, July 31, 2014

Haast's Eagle Imperial IPA


Artist's rendition of a Haast's Eagle,
about to mess up some Moa in
prehistoric New Zealand. Art by John Megahan.




Imperial IPAs are, really, what took me from occasional beer enjoyer to beer fanatic and homebrewer. I think I can even single out the Great Divide Hercules Imperial IPA as the culprit. It's huge, punchy, and holy hops is that flavor strong! Citrus! Pine! Could it strip paint? Probably, and I wouldn't have it any other way! I think it's fitting then that the first recipe I made on my own and brewed successfully is an imperial IPA.
Those yellow clusters are called lupulin glands. That's
where all the resins and oils that give hops their
bittering and flavor/aromatic properties reside.
The inspiration for this IPA in particular came from perusing hops on the Northern Brewer site. At the time I had just started really reading about brewing beer, and knew what alpha acid is, and I had some idea about the other oils in hops that lend flavors to beer. I was looking through all these different hop varieties for a change of pace. I've had plenty of piney, citrusy IPAs, and I love them, but I wanted something a little different*. 

Turns out New Zealand is quite well known for its hop-growing climate, and has some really cool varieties that have been propagated there! Since I knew I wanted to make an imperial IPA, I focused on the high alpha acid hop varieties of New Zealand provenance. I settled on Pacific Gem and Nelson Sauvin. Both of these hops have really good bittering capability. Pacific Gem is the bittering workhorse of this beer, while Nelson Sauvin comes in later to provide bitterness and hop flavor+aroma. These high alpha acid hops are brought together for a beer that punches in at just over 90 IBUs (international bittering units). For those who are wondering what that number means exactly, Bud Light weighs in at 6.4 IBUs. The higher the IBUs, the more bitter the beer will be.  
This is a Harpy eagle, crouching and being gigantic on this guy's arm.
The Haast's eagle was about 1/3 larger! Also, check out the talons!

This brings me to the namesake of the beer. Originally I was going to call this one "Moa", but it turns
Pretty impressive, considering just how
huge Harpy eagles are.
out there is a brewery in New Zealand called Moa. So in the interest of not ruffling anyone's copyright feathers, I went for the lesser known but definitely more badass Haast's eagle (Harpagornis moorei). An eagle of nearly Tolkein-esque proportions, the now extinct Haast's eagle is believed to be the heaviest member of the Accipitridae, the family which includes eagles, hawks, Old World vultures, and kites.  Female Haast's eagles were larger and heavier than the males, weighing an estimated 31 pounds, with an 8.5 foot wingspan; estimates for male Haast's Eagles place them at 25 pounds, with a presumably smaller wingspan (Braithwaite 1992; Worth and Holdaway 2003). 



On the left is a Haast's eagle talon, compared to a Little eagle
talon on the right. Little eagles are a member of the genus
Hieraaetus, which was found to contain the closest
living relatives to the Haast's eagle by Brunce et al. 2005. 
Using recovered mitochodrial DNA from Haast's Eagle remains, Dr. Michael Brunce and his colleagues created a maximum likelihood phylogenetic tree to determine a possible ancestral origin for the massive bird of prey (Brunce et al. 2005). In an interesting twist, the Haast's Eagle is most closely related to the diminutive eagle genus Hieraaetus (Brunce et al, 2005). This implies a remarkable increase in size from the hypothesized ancestors of the Haast's Eagle, and provides an excellent example of island gigantism! Also of note is that the Haast's Eagle becomes giant while retaining the ability to fly. Most birds, such as the moa, elephant bird, and the dodo, all become secondarily flightless when they increase drastically in size, owed to a lack of terrestrial predators on their home islands as they were evolving (Brunce et al, 2005). Without any large mammalian carnivores around, Haast's eagles were almost certainly the dominant predator of the South Island of New Zealand, terrorizing the moa birds native to the island until the arrival of humans in approximately 1280 AD. Haast's eagles are believed to have gone extinct around the year 1400 AD, following the devastation of its food sources and broader ecosystem by humans (Allentoft et al. 2014). 

The red text shows the position of the Haast's eagle (Harpagornis moorei) among other birds of prey, including the Little eagle. Image from Bunce et al. 2005.


 



*Not to say I didn't order some punchy pine and citrus flavored/aroma hops for other beers I am working on...




Haast's Eagle Imperial IPA

Type: All Grain


Batch Size: 
1.10 gal


Boil Size: 
1.64 gal



Boil Time: 
60 min
End of Boil Vol: 1.14 gal

Final Bottling Vol: 1.10 gal

Fermentation: Ale, Two Stage

Brewer: David Levering

Asst Brewer: Medhavi Ambardar

Equipment: David's Brewing Equipment

Efficiency: 60.00 %


Est Mash Efficiency: 60.00 %





Prepare for Brewing

Clean and Prepare Brewing Equipment





Total Water Needed: 2.13 gal

Water Prep


Amt  Name  Type  %/IBU
2.13 gal  Distilled Water  Water  -
0.63 tsp  Gypsum (Calcium Sulfate) (Mash 60.0 mins)  Water Agent  -
0.30 tsp  Calcium Chloride (Mash 60.0 mins)  Water Agent  -
0.22 g  Epsom Salt (MgSO4) (Mash 60.0 mins)  Water Agent  -




Mash or Steep Grains

Mash Ingredients


Amt  Name  Type  %/IBU
3 lbs 1.3 oz  Pale Malt (2 Row) US (2.0 SRM)  Grain 72.00%
9.6 oz  Pale Malt, Maris Otter (3.0 SRM)  Grain 14.00%
4.8 oz  Caramel/Crystal Malt - 20L (20.0 SRM)  Grain 7.00%
1.6 oz  Caramel/Crystal Malt - 80L (80.0 SRM)  Grain 2.30%




Mash Steps


Name  Description  Step Temperature  Step Time
Mash In Add 5.10 qt of water at 159.1 F  148.0 F  75 min

Batch sparge with 2 steps (0.04gal, 0.82gal) of 168.0 F water






Add water to achieve boil volume of 1.64 gal

Estimated pre-boil gravity is 1.059 SG





Boil Ingredients


Amt  Name  Type  %/IBU
3.2 oz  Candi Sugar, Clear (0.5 SRM)  Sugar 4.70%
0.10 oz  Pacific Gem [15.00 %] - Boil 50.0 min  Hop  22.7 IBUs
0.10 oz  Pacific Gem [15.00 %] - Boil 30.0 min  Hop  18.4 IBUs
0.10 oz  Nelson Sauvin [12.00 %] - Boil 20.0 min  Hop  11.6 IBUs
0.20 oz  Nelson Sauvin [12.00 %] - Boil 10.0 min  Hop  13.9 IBUs
0.20 oz  Pacific Gem [15.00 %] - Boil 10.0 min  Hop  17.3 IBUs
0.10 oz Irish Moss - Boil 15.0 min Clarifier
Steeped Hops


Amt  Name  Type  %/IBU
0.10 oz  Nelson Sauvin [12.00 %] - Steep/Whirlpool 10.0 min  Hop  3.5 IBUs
0.10 oz  Pacific Gem [15.00 %] - Steep/Whirlpool 10.0 min  Hop  4.3 IBUs




Estimated Post Boil Vol: 1.14 gal and Est Post Boil Gravity: 1.088 SG




Cool and Transfer Wort

Cool wort to fermentation temperature of 70 F. 

Transfer wort to fermenter

Add water if needed to achieve final volume of 1.10 gal

Pitch Yeast and Measure Gravity and Volume





Fermentation Ingredients

Amt  Name  Type  %/IBU
0.2 pkg  London Ale Yeast (Wyeast Labs #1028) [124.21 ml]  Yeast  -
Starting Gravity Target: 1.088

Add water if needed to achieve final volume of 1.10 gal





Fermentation


Primary Fermentation (4.00 days at 67.0 F ending at 67.0 F)

Secondary Fermentation (17.00 days at 67.0 F ending at 67.0 F)





Dry Hop and Bottle/Keg

Dry Hop/Bottling Ingredients

Amt  Name  Type  %/IBU
0.20 oz  Nelson Sauvin [12.00 %] - Dry Hop 7.0 Days  Hop  0.0 IBUs




Final Gravity Estimate: 1.013

Date Bottled/Kegged: Carbonation: Bottle with 0.86 oz Corn Sugar
Age beer for 14.00 days at 65.0 F

Age beer another 14 -21 days at 45-50 F. 





Notes


Additions to be made to the heated water before it is mixed with the malted grains:
Gypsum: 0.63tsp


CaCl2: 0.2tsp


Epsom Salt: 0.22tsp

Phosphoric acid addition: 2tbs















Dry hops should be added using a muselin bag to prevent them from creating a mess inside the fermenter. This is especially true if using pellet hops. Make sure the fermenter is well sealed during the dry hopping phase to prevent volatile aromatics from escaping the beer. The first 4 days of the dry hopping should happen at around 65 degrees F. For the final 3 days, cold crash the fermentor to 40-50 degrees F. Before bottling, remove the muselin bag full of hops from the fermenter.

 

References
Brathwaite, D. H. 1992. Notes on the weight, flying ability, habitat, and prey of Haast's Eagle (Harpagornis moorei). Notornis (Ornithological Society of New Zealand), 39: 239–247.

Bunce, M., Szulkin, M., Lerner, HRL., Barnes, I., Shapiro, B., Cooper, A., Holdaway, R.N. (2005) Ancient DNA Provides New Insights into the Evolutionary History of New Zealand's Extinct Giant Eagle. PLoS Biol, 3: e9.


Worthy, T. & Holdaway, R., The Lost World of the Moa: Prehistoric Life of New Zealand. Indiana University Press (2003).

Allentoft, M.E., Heller, R., Oskam, C.L., Lorenzen, E.D., Hale, M.L., Gilbert, M.T.P., Jacomb, C., Holdaway, R.N., Bunce, M. 2014. Extinct New Zealand megafauna were not in decline before human colonization. PNAS, 111: 4922-4927